I am an INRIA PhD student in BONSAI bioinformatics research team at University of Lille 1, France. I study de novo genome sequencing and assembly, with third generation sequencing technology.

Scientific work

  • Talks Optimizing early steps of long-read genome assembly, at Seqbio 2018 (pdf)
  • Poster presentation at JOBIM 2018 State-of-the-art long-read overlapping tools comparative analysis (pdf)
  • Talks Debugging long-read genome assemblies using string graph analysis, at Seqbio 2017 (pdf)
  • Poster presentation at JOBIM 2017 Debugging long-read genome assemblies using string graph analysis (pdf)
  • Review and organization for JOBIM 2017
  • Review and organization for JeBiF Workshop @ JOBIM 2017 Lille

Scientific tools

  • Assembly_report: an assembly analyzer and debugger for Canu and mini{map|asm}
  • yacrd Yet Another Chimeric Read Detector: using all-against-all read mapping for chimeras read detection
  • fpa Filter Pairwise Alignment: filter all-against-all read mapping, by type, length, name. fpa can convert alignment in overlap graph (GFA1)

Side project