I am an INRIA PhD student in BONSAI bioinformatics research team at University of Lille 1, France. I study de novo genome sequencing and assembly, with third generation sequencing technology.

Scientific work

Scientific tools

  • Assembly_report: an assembly analyzer and debugger for Canu and mini{map|asm}
  • yacrd Yet Another Chimeric Read Detector: using all-against-all read mapping for chimeras read detection
  • fpa Filter Pairwise Alignment: filter all-against-all read mapping, by type, length, name. fpa can convert alignment in overlap graph (GFA1)

Side project